--- title: Epigenetics | Protein-DNA Interaction Analysis description: Comprehensive per-sample analysis of raw chromatin immunoprecipitation sequencing ChIP-seq files to annotate and analyze... --- [![Rosalind_Logo_Primary_RGB](https://www.rosalind.bio/hs-fs/hubfs/2020-website-images/2023/New-Images/Rosalind_Logo_Primary_RGB.png?width=250&name=Rosalind_Logo_Primary_RGB.png "Rosalind_Logo_Primary_RGB")](https://www.onramp.bio/) # Protein-DNA Interaction Analysis ![divider.jpg](https://www.rosalind.bio/hs-fs/hubfs/Aug_2016/divider.jpg?width=1843&name=divider.jpg "divider.jpg")   #### Comprehensive epigenetics (ChIP) analysis: - Rapid analysis of raw chromatin immunoprecipitation sequencing (ChIP-seq) reads to identify regions of protein interaction with DNA - Annotate and analyze motifs on the predicted binding regions - Differential analysis of binding between conditions - Identified regions of protein interaction with DNA - Industry standard tools published in peer-reviewed journals - Collaborate and share results across any extended research team   #### Deliverables: - Intuitive results visualization - Targeted data plots, charts, venn diagrams, heatmaps, time series and clustering - ChIP QC Reports         - Peaks files - Annotations and motif analysis - Differentially bound regions / genes   ![ChIP_Timeline.jpg](https://www.rosalind.bio/hs-fs/hubfs/00May17/ChIP_Timeline.jpg?width=278&name=ChIP_Timeline.jpg) ### Case Studies & Pricing ## Let's Keep In Touch Join our mailing list to get future updates for webinars, product releases and journal publications. ROSALIND helps the world’s leading life science researchers to derive more value from their data and complete projects faster. 13520 Evening Creek Lane, Suite 406, San Diego, CA 92128 Call us: 1-855-766-7267  Email: [info@rosalind.bio](mailto:info@rosalind.bio) ### Subscribe to our Updates Copyright © 2023 ROSALIND, Inc. All rights reserved.