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      What types of input files are supported?

      For Gene Expression experiments, FASTQ files and count files are supported. Compressed FASTQs will have faster upload times. Our full list of supported file types include: .FASTQ, .FASTQ.GZ, .CSV, .TXT, and .RCC (NanoString only)

       

      File Type                                                        Experiment Type

      FASTQ, FASTQ.GZ, FGZ

      mRNA-seq

      miRNA-seq

      ChIP-seq

      ATAC-seq

      QuantSeq 3' mRNA-Seq FWD or REV

       

      TXT or CSV

      mRNA-seq (Processed Counts)

      miRNA-seq (Processed Counts)

      scRNA-seq Loupe Clustering

      Gene Expression nSolver® Normalized Counts

      miRNA nSolver® Normalized Counts

       

       
      RCC

      Gene Expression nCounter® RCC

      miRNA nCounter® RCC

      PlexSet™ Gene Expression (Limited Beta)
       

       

      Please see here to learn more about how to upload multiple files for paired-end or multi-lane data