Analyze Protein Interactions

with DNA Through ChIP-Seq Data

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Empowering Epigenetics Research

ROSALIND transforms the analysis of ChIP-Seq with an end-to-end web-based experience for analysis, interpretation and collaboration. Scientists of every skill level can benefit from ROSALIND since no programming or bioinformatics skils are required.

Explore Protein Binding
& Histone Marks

Seamlessly sift and sort through differential protein binding and histone marks on gene promoters and see the pathways associated. Change cut-offs with new filters. Validate gene signatures and discover new signatures. 

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03 - ChIP Motifs & Enrichment

Explore overlaps in
protein binding &
histone marks regions

Using the Peak Overlap interactive analysis, identify unique and overlapping protein binding or histone marks regions across samples and comparison groups. Select your samples intersections based on the Venn diagram and explore the most significant protein binding regions in the annotated table. Select a meta-analysis to begin exploring your results. 

Visualize protein binding
& histone marks regions

Locate areas across samples using the integrated genome browser as the gene models annotations. Save the time, complexity and the inconvenience of exporting your data to UCSC or IG. ROSALIND users can search by gene or chromosomal location and organize samples by groups and select which tracks to display. 

02 - ChIP Tracks
08 - Pathway Exploration

Dive Deeper
into pathways &
knowledge bases

Review the significant pathways associated with genes exhibiting protein binding and histone marks on their proximal promoters. 

Pathway diagrams are
colored by protein
binding & histone marks

Access pathway diagrams with detailed descriptions, protein binding and histone marks changes.  Interact with pathway diagrams & gene lists to see corresponding genes highlighted in the pathway diagram. 

9 - Pathway Detail-1

Interested in ROSALIND for ChIP-Seq Analysis?

Schedule a demo to learn how ROSALIND can accelerate ChIP-Seq data analysis

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