Jeremy Davis-Turak

Jeremy Davis-Turak

Jeremy earned his Ph.D. in Bioinformatics and Systems Biology in the lab of Alexander Hoffmann at UCSD, researching kinetic models of co-transcriptional splicing. In his studies he developed analyses for RNA-seq, nascent RNA-seq, GRO-seq and MNase-seq that were intimately linked with mechanistic models. Jeremy set up the Bioinformatics Core at the San Diego Center for Systems Biology, optimizing pipeline for RNA-seq and ChIP-seq. Jeremy also has extensive experience analyzing gene expression data from his time working in the Neurogenetics Laboratory at UCLA, where he became an expert in the analysis of Microarrays, Weighted Gene Coexpression Network Analysis, pathways analyses, gene set enrichment and motif analysis. His ambitious goal of enabling researchers without programming experience to ask quantitative questions led to the development of web portals featuring tools to query relational databases of expression data (microarray and sequencing) and perform on-the-fly computational analyses.

Recent posts by Jeremy Davis-Turak

4 min read

ROSALIND v3.16: Enhanced Collaboration and Pathways

By Jeremy Davis-Turak on Jun 26, 2020 7:28:36 PM

Our latest ROSALIND update v3.16 is now live and delivers enhancements for collaboration, 10X Single Cell RNA (scRNA-seq), Pathway Enrichment and more.

Topics: BioInformatics Rosalind Public Data Collaboration COVID-19
3 min read

Active Motif & OnRamp Announce Partnership

By Jeremy Davis-Turak on Dec 12, 2018 7:37:00 AM

OnRamp’s ROSALIND and Active Motif offer an improved ChIP-Seq data analysis experience for researchers with state-of-the-art dynamic track plots and advanced collaboration capabilities.

FOR IMMEDIATE RELEASE

San Diego, California – December 12, 2018 - OnRamp BioInformatics, a genomics company focused on scientist-friendly bioinformatics software solutions, today announced they are working with Active Motif to improve accuracies in data analysis for ChIP-Seq experiments.

OnRamp’s flagship software, ROSALIND, provides a point-and-click experience to speed up and simplify the process of genomic data analysis from experiment setup to QC and interactive data visualization to interpretation. With this integration, researchers will now benefit from an optimized analysis that includes the unique characteristics of Active Motif kits and antibodies, including Unique Molecular Identifiers (UMI) and spike-in solutions.

Download The One-Sheet

Topics: Big Data Personalized Medicine Cancer BioInformatics Biology Rosalind advaita
1 min read

View Our Meta Analysis Webinar

By Jeremy Davis-Turak on May 9, 2018 9:19:00 AM

Building a "Comparison of Comparisons" Across Multiple Experiments using Meta-Analysis on ROSALIND

Topics: Transcriptome BioInformatics Webinar RNAseq
4 min read

Decoding Human Health

By Jeremy Davis-Turak on May 3, 2018 9:10:20 AM

OnRamp and Advaita announce a Strategic Partnership to bring collaboration and widespread accessibility to genomic data analysis

San Diego, CA – May 3, 2018 OnRamp Bioinformatics, Inc., a genomics company providing the premier scientist-focused data analysis platform, and Advaita BioInformatics, a leader in personalized medicine and interpretation of Next-Gen Sequencing data, announced they are partnering to provide a comprehensive research experience from sample to interpretation with a seamless handoff between systems.  

OnRamp.Bio’s flagship product, ROSALIND™, enables researchers, drug developers and bench scientists to analyze raw genomics data by providing a transformative experience through point-and-click experiment set up, interactive data visualization and interpretation. This new approach increases productivity by freeing up time for the bioinformatician to focus on more challenging workloads, while making bioinformatic analysis more accessible for the scientist to do more discovery with their data.

Topics: Big Data Personalized Medicine Cancer BioInformatics Biology Rosalind advaita
2 min read

Pipelines & Data Integration

By Jeremy Davis-Turak on Feb 15, 2017 10:36:00 AM

Challenges and opportunities in the research setting. 

The emergence and mass utilization of high-throughput (HT) technologies, including sequencing technologies (genomics) and mass spectrometry (proteomics, metabolomics, lipids), has allowed geneticists, biologists, and biostatisticians to bridge the gap between genotype and phenotype on a massive scale. These new technologies have brought rapid advances in our understanding of cell biology, evolutionary history, microbial environments, and are increasingly providing new insights and applications towards clinical care and personalized medicine.

Topics: Big Data Pipelines BioInformatics Genomic Data Management
2 min read

MICROBIOMES & OUR HEALTH

By Jeremy Davis-Turak on Dec 19, 2016 1:30:00 PM

Could health outcomes be determined by the little guys who call us home?

The San Diego MicroBiome Meetup, hosted by Clotide Telling of Illumina, Inc., kicked off with a presentation by OnRamp's Scientific Advisor, Rob Edwards. Rob's story of the discovery of the crAssphage is a truly amazing example of Metagenomics and the MicroBiome, and is testament to the power of the sequencing revolution.

Topics: microbiome crAssphage San Diego State University
3 min read

Horizon Oil Spill Effects on Mahi-Mahi (insights powered by OnRamp)

By Jeremy Davis-Turak on Jul 20, 2016 9:38:00 AM

The threat to fish embryos and larvae development.

MIAMI-A research team led by scientists at the University of California, Riverside and the University of Miami (UM) Rosenstiel School of Marine and Atmospheric Science have found that ultraviolet light is changing the structure of the Deepwater Horizon (DWH) oil components into something more toxic, further threatening numerous commercially and ecologically important fishes.

Topics: BioInformatics Genomic Data Management
2 min read

OnRamp Featured in Frontline Genomics Magazine

By Jeremy Davis-Turak on Jan 20, 2016 11:44:00 AM

Click here to read the full interview.

Topics: Big Data BioInformatics Genomic Data Management